Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LIHC | rs7130191 | chr11:73529296 | C/T | 3.47E-6 | 368 | 19.43 | 21.2 | 1.87 | KM Plot |
| LIHC | rs71308577 | chr3:7954585 | T/C | 2.03E-7 | 366 | 19.17 | 23.18 | 3.03 | KM Plot |
| LIHC | rs7140701 | chr14:79029834 | C/T | 2.57E-5 | 368 | 8.58 | 21.1 | 19.7 | KM Plot |
| LIHC | rs71412688 | chr14:56021539 | A/G | 8.58E-9 | 366 | 18.87 | 27.45 | 1.13 | KM Plot |
| LIHC | rs71412689 | chr14:56024538 | C/T | 8.58E-9 | 366 | 18.87 | 27.45 | 1.13 | KM Plot |
| LIHC | rs71412690 | chr14:56024654 | C/T | 8.58E-9 | 366 | 18.87 | 27.45 | 1.13 | KM Plot |
| LIHC | rs71413577 | chr14:56018641 | T/C | 7.09E-9 | 367 | 18.93 | 26.12 | 1.13 | KM Plot |
| LIHC | rs71413578 | chr14:56018651 | T/C | 7.09E-9 | 367 | 18.93 | 26.12 | 1.13 | KM Plot |
| LIHC | rs71421067 | chr2:158948998 | A/G | 6.12E-6 | 359 | 21.02 | 13.92 | 9.07 | KM Plot |
| LIHC | rs714241 | chr14:73700667 | A/T | 1.97E-6 | 363 | 20.38 | 13.17 | 4.93 | KM Plot |
| LIHC | rs71488249 | chr11:107162752 | A/G | 8.88E-6 | 365 | 19.87 | 18.5 | 1.87 | KM Plot |
| LIHC | rs71611715 | chr5:26035588 | G/A | 1.63E-5 | 364 | 19.5 | 20.65 | 1.03 | KM Plot |
| LIHC | rs71611716 | chr5:26035616 | C/T | 1.63E-5 | 364 | 19.5 | 20.65 | 1.03 | KM Plot |
| LIHC | rs71611717 | chr5:26035661 | C/T | 1.63E-5 | 364 | 19.5 | 20.65 | 1.03 | KM Plot |
| LIHC | rs7170681 | chr15:91753540 | T/C | 4.37E-9 | 357 | 20.8 | 14.33 | 5.38 | KM Plot |